{
  "_id": "6a1beda91d7bb097a0a20588",
  "Package": "biosampleR",
  "Title": "Biodiversity Index Calculation and Bootstrap Confidence Interval\nEstimation",
  "Version": "1.0.4",
  "Authors@R": "person(\"Craig Eric\", \"Simpkins\", , \"simpkinscraig063@gmail.com\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0003-3212-1379\"))",
  "Description": "Provides tools for the calculation of common biodiversity\nindices from count data. Additionally, it incorporates\nbootstrapping techniques to generate multiple samples,\nfacilitating the estimation of confidence intervals around\nthese indices. Furthermore, the package allows for the\nexploration of how variation in these indices changes with\ndiffering numbers of sites, making it a useful tool with which\nto begin an ecological analysis. Methods are based on the\nfollowing references: Chao et al. (2014)\n<doi:10.1890/13-0133.1>, Chao and Colwell (2022)\n<doi:10.1002/9781119902911.ch2>, Hsieh, Ma,` and Chao (2016)\n<doi:10.1111/2041-210X.12613>.",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.2.3",
  "LazyData": "true",
  "Config/testthat/edition": "3",
  "VignetteBuilder": "knitr",
  "URL": "https://github.com/csim063/biosampleR",
  "BugReports": "https://github.com/csim063/biosampleR/issues",
  "Repository": "https://csim063.r-universe.dev",
  "Date/Publication": "2023-09-17 04:52:22 UTC",
  "RemoteUrl": "https://github.com/csim063/biosampler",
  "RemoteRef": "HEAD",
  "RemoteSha": "cbda3e16d26c46e154aab2789966356650be9386",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-31 07:53:32 UTC",
    "User": "root"
  },
  "Author": "Craig Eric Simpkins [aut, cre] (ORCID:\n<https://orcid.org/0000-0003-3212-1379>)",
  "Maintainer": "Craig Eric Simpkins <simpkinscraig063@gmail.com>",
  "MD5sum": "2ff3187350bb63ca182bbb0569e1e325",
  "_user": "csim063",
  "_type": "src",
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  "_created": "2026-05-31T07:53:32.000Z",
  "_published": "2026-05-31T08:13:29.074Z",
  "_distro": "noble",
  "_jobs": [
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  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/csim063/biosampler",
  "_commit": {
    "id": "cbda3e16d26c46e154aab2789966356650be9386",
    "author": "csim063 <simpkinscraig063@gmail.com>",
    "committer": "csim063 <simpkinscraig063@gmail.com>",
    "message": "Updated README to reflect CRAN acceptance\n",
    "time": 1694926342
  },
  "_maintainer": {
    "name": "Craig Eric Simpkins",
    "email": "simpkinscraig063@gmail.com",
    "login": "csim063",
    "linkedin": "in/craig-eric-simpkins",
    "orcid": "0000-0003-3212-1379",
    "description": "",
    "uuid": 23231474
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  "_dependencies": [
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      "package": "R",
      "version": ">= 2.10",
      "role": "Depends"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
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    {
      "package": "vegan",
      "role": "Suggests"
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  "_owner": "csim063",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_topics": [
    "biod"
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "csim063",
      "count": 25,
      "uuid": 23231474
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  "_userbio": {
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    "type": "user",
    "name": "Craig Simpkins"
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  "_downloads": {
    "count": 160,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/biosampleR"
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  "_devurl": "https://github.com/csim063/biosampler",
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  "_rbuild": "4.6.0",
  "_assets": [
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    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/csim063/biosampler",
  "_realowner": "csim063",
  "_cranurl": true,
  "_releases": [
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      "version": "1.0.4",
      "date": "2023-09-13"
    }
  ],
  "_exports": [
    "calc_delta_var",
    "calc_diversity_indices",
    "create_resample",
    "generate_subsamples",
    "get_sample_stats"
  ],
  "_datasets": [
    {
      "name": "BCI",
      "title": "Barro-Colorado Island Tree Counts",
      "object": "BCI",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Abarema.macradenia",
        "Vachellia.melanoceras",
        "Acalypha.diversifolia",
        "Acalypha.macrostachya",
        "Adelia.triloba",
        "Aegiphila.panamensis",
        "Alchornea.costaricensis",
        "Alchornea.latifolia",
        "Alibertia.edulis",
        "Allophylus.psilospermus",
        "Alseis.blackiana",
        "Amaioua.corymbosa",
        "Anacardium.excelsum",
        "Andira.inermis",
        "Annona.spraguei",
        "Apeiba.glabra",
        "Apeiba.tibourbou",
        "Aspidosperma.desmanthum",
        "Astrocaryum.standleyanum",
        "Astronium.graveolens",
        "Attalea.butyracea",
        "Banara.guianensis",
        "Beilschmiedia.pendula",
        "Brosimum.alicastrum",
        "Brosimum.guianense",
        "Calophyllum.longifolium",
        "Casearia.aculeata",
        "Casearia.arborea",
        "Casearia.commersoniana",
        "Casearia.guianensis",
        "Casearia.sylvestris",
        "Cassipourea.guianensis",
        "Cavanillesia.platanifolia",
        "Cecropia.insignis",
        "Cecropia.obtusifolia",
        "Cedrela.odorata",
        "Ceiba.pentandra",
        "Celtis.schippii",
        "Cespedesia.spathulata",
        "Chamguava.schippii",
        "Chimarrhis.parviflora",
        "Maclura.tinctoria",
        "Chrysochlamys.eclipes",
        "Chrysophyllum.argenteum",
        "Chrysophyllum.cainito",
        "Coccoloba.coronata",
        "Coccoloba.manzinellensis",
        "Colubrina.glandulosa",
        "Cordia.alliodora",
        "Cordia.bicolor",
        "Cordia.lasiocalyx",
        "Coussarea.curvigemma",
        "Croton.billbergianus",
        "Cupania.cinerea",
        "Cupania.latifolia",
        "Cupania.rufescens",
        "Cupania.seemannii",
        "Dendropanax.arboreus",
        "Desmopsis.panamensis",
        "Diospyros.artanthifolia",
        "Dipteryx.oleifera",
        "Drypetes.standleyi",
        "Elaeis.oleifera",
        "Enterolobium.schomburgkii",
        "Erythrina.costaricensis",
        "Erythroxylum.macrophyllum",
        "Eugenia.florida",
        "Eugenia.galalonensis",
        "Eugenia.nesiotica",
        "Eugenia.oerstediana",
        "Faramea.occidentalis",
        "Ficus.colubrinae",
        "Ficus.costaricana",
        "Ficus.insipida",
        "Ficus.maxima",
        "Ficus.obtusifolia",
        "Ficus.popenoei",
        "Ficus.tonduzii",
        "Ficus.trigonata",
        "Ficus.yoponensis",
        "Garcinia.intermedia",
        "Garcinia.madruno",
        "Genipa.americana",
        "Guapira.myrtiflora",
        "Guarea.fuzzy",
        "Guarea.grandifolia",
        "Guarea.guidonia",
        "Guatteria.dumetorum",
        "Guazuma.ulmifolia",
        "Guettarda.foliacea",
        "Gustavia.superba",
        "Hampea.appendiculata",
        "Hasseltia.floribunda",
        "Heisteria.acuminata",
        "Heisteria.concinna",
        "Hirtella.americana",
        "Hirtella.triandra",
        "Hura.crepitans",
        "Hieronyma.alchorneoides",
        "Inga.acuminata",
        "Inga.cocleensis",
        "Inga.goldmanii",
        "Inga.laurina",
        "Inga.semialata",
        "Inga.nobilis",
        "Inga.oerstediana",
        "Inga.pezizifera",
        "Inga.punctata",
        "Inga.ruiziana",
        "Inga.sapindoides",
        "Inga.spectabilis",
        "Inga.umbellifera",
        "Jacaranda.copaia",
        "Lacistema.aggregatum",
        "Lacmellea.panamensis",
        "Laetia.procera",
        "Laetia.thamnia",
        "Lafoensia.punicifolia",
        "Licania.hypoleuca",
        "Licania.platypus",
        "Lindackeria.laurina",
        "Lonchocarpus.heptaphyllus",
        "Luehea.seemannii",
        "Macrocnemum.roseum",
        "Maquira.guianensis.costaricana",
        "Margaritaria.nobilis",
        "Marila.laxiflora",
        "Maytenus.schippii",
        "Miconia.affinis",
        "Miconia.argentea",
        "Miconia.elata",
        "Miconia.hondurensis",
        "Mosannona.garwoodii",
        "Myrcia.gatunensis",
        "Myrospermum.frutescens",
        "Nectandra.cissiflora",
        "Nectandra.lineata",
        "Nectandra.purpurea",
        "Ochroma.pyramidale",
        "Ocotea.cernua",
        "Ocotea.oblonga",
        "Ocotea.puberula",
        "Ocotea.whitei",
        "Oenocarpus.mapora",
        "Ormosia.amazonica",
        "Ormosia.coccinea",
        "Ormosia.macrocalyx",
        "Pachira.quinata",
        "Pachira.sessilis",
        "Perebea.xanthochyma",
        "Cinnamomum.triplinerve",
        "Picramnia.latifolia",
        "Piper.reticulatum",
        "Platymiscium.pinnatum",
        "Platypodium.elegans",
        "Posoqueria.latifolia",
        "Poulsenia.armata",
        "Pourouma.bicolor",
        "Pouteria.fossicola",
        "Pouteria.reticulata",
        "Pouteria.stipitata",
        "Prioria.copaifera",
        "Protium.costaricense",
        "Protium.panamense",
        "Protium.tenuifolium",
        "Pseudobombax.septenatum",
        "Psidium.friedrichsthalianum",
        "Psychotria.grandis",
        "Pterocarpus.rohrii",
        "Quararibea.asterolepis",
        "Quassia.amara",
        "Randia.armata",
        "Sapium.broadleaf",
        "Sapium.glandulosum",
        "Schizolobium.parahyba",
        "Senna.dariensis",
        "Simarouba.amara",
        "Siparuna.guianensis",
        "Siparuna.pauciflora",
        "Sloanea.terniflora",
        "Socratea.exorrhiza",
        "Solanum.hayesii",
        "Sorocea.affinis",
        "Spachea.membranacea",
        "Spondias.mombin",
        "Spondias.radlkoferi",
        "Sterculia.apetala",
        "Swartzia.simplex.var.grandiflora",
        "Swartzia.simplex.continentalis",
        "Symphonia.globulifera",
        "Handroanthus.guayacan",
        "Tabebuia.rosea",
        "Tabernaemontana.arborea",
        "Tachigali.versicolor",
        "Talisia.nervosa",
        "Talisia.princeps",
        "Terminalia.amazonia",
        "Terminalia.oblonga",
        "Tetragastris.panamensis",
        "Tetrathylacium.johansenii",
        "Theobroma.cacao",
        "Thevetia.ahouai",
        "Tocoyena.pittieri",
        "Trattinnickia.aspera",
        "Trema.micrantha",
        "Trichanthera.gigantea",
        "Trichilia.pallida",
        "Trichilia.tuberculata",
        "Trichospermum.galeottii",
        "Triplaris.cumingiana",
        "Trophis.caucana",
        "Trophis.racemosa",
        "Turpinia.occidentalis",
        "Unonopsis.pittieri",
        "Virola.multiflora",
        "Virola.sebifera",
        "Virola.surinamensis",
        "Vismia.baccifera",
        "Vochysia.ferruginea",
        "Xylopia.macrantha",
        "Zanthoxylum.ekmanii",
        "Zanthoxylum.juniperinum",
        "Zanthoxylum.panamense",
        "Zanthoxylum.setulosum",
        "Zuelania.guidonia"
      ],
      "rows": 50,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "BCI",
      "title": "Barro-Colorado Island Tree Counts",
      "topics": [
        "BCI"
      ]
    },
    {
      "page": "calc_delta_var",
      "title": "Calculate the change in variance with increasing number of sites",
      "topics": [
        "calc_delta_var"
      ]
    },
    {
      "page": "calc_diversity_indices",
      "title": "Calculate biodiversity summary indices from count data",
      "topics": [
        "calc_diversity_indices"
      ]
    },
    {
      "page": "create_resample",
      "title": "Create multiple resamples of a data set.",
      "topics": [
        "create_resample"
      ]
    },
    {
      "page": "generate_subsamples",
      "title": "Generate subsamples of a data frame with a number of sites between a minimum and maximum value.",
      "topics": [
        "generate_subsamples"
      ]
    },
    {
      "page": "get_sample_stats",
      "title": "Calculate biodiversity measures and summary statistics for a data set using repeated sampling",
      "topics": [
        "get_sample_stats"
      ]
    }
  ],
  "_readme": "https://github.com/csim063/biosampler/raw/HEAD/README.md",
  "_rundeps": [
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      "headings": [],
      "created": "2023-07-30 01:21:11",
      "modified": "2023-07-30 01:21:11",
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