Package: spectre 1.0.2
spectre: Predict Regional Community Composition
Predict regional community composition at a fine spatial resolution using only sparse biological and environmental data. The package is based on the DynamicFOAM algorithm described in Mokany et al. (2011) <doi:10.1111/j.1461-0248.2011.01675.x>.
Authors:
spectre_1.0.2.tar.gz
spectre_1.0.2.zip(r-4.5)spectre_1.0.2.zip(r-4.4)spectre_1.0.2.zip(r-4.3)
spectre_1.0.2.tgz(r-4.4-x86_64)spectre_1.0.2.tgz(r-4.4-arm64)spectre_1.0.2.tgz(r-4.3-x86_64)spectre_1.0.2.tgz(r-4.3-arm64)
spectre_1.0.2.tar.gz(r-4.5-noble)spectre_1.0.2.tar.gz(r-4.4-noble)
spectre_1.0.2.tgz(r-4.4-emscripten)spectre_1.0.2.tgz(r-4.3-emscripten)
spectre.pdf |spectre.html✨
spectre/json (API)
NEWS
| # Install 'spectre' in R: |
| install.packages('spectre', repos = c('https://csim063.r-universe.dev', 'https://cloud.r-project.org')) |
- alpha_list - Matrix of predicted alpha diversity in each cell.
- estimated_gamma - Total (estimated) species in the system.
- minimal_example_data - List with example data created using the 'gdm' package
- target_matrix - Pairwise matrix of species in common.
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 3 years agofrom:4fbfd3a84b. Checks:OK: 1 NOTE: 8. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 27 2024 |
| R-4.5-win-x86_64 | NOTE | Oct 27 2024 |
| R-4.5-linux-x86_64 | NOTE | Oct 27 2024 |
| R-4.4-win-x86_64 | NOTE | Oct 27 2024 |
| R-4.4-mac-x86_64 | NOTE | Oct 27 2024 |
| R-4.4-mac-aarch64 | NOTE | Oct 27 2024 |
| R-4.3-win-x86_64 | NOTE | Oct 27 2024 |
| R-4.3-mac-x86_64 | NOTE | Oct 27 2024 |
| R-4.3-mac-aarch64 | NOTE | Oct 27 2024 |
Exports:calc_commonness_errorgenerate_commonness_matrix_from_gdmplot_commonnessplot_errorrun_optimization_min_conf
Dependencies:briocallrclicolorspacecrayondescdiffobjdigestevaluatefansifarverfsggplot2gluegtableisobandjsonlitelabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgbuildpkgconfigpkgloadpraiseprocessxpsR6RColorBrewerRcppRcppProgressrematch2rlangrprojrootscalestestthattibbleutf8vctrsviridisLitewaldowithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Matrix of predicted alpha diversity in each cell. | alpha_list |
| calc_commonness_error | calc_commonness_error |
| Total (estimated) species in the system. | estimated_gamma |
| generate_commonness_matrix_from_gdm | generate_commonness_matrix_from_gdm |
| List with example data created using the 'gdm' package | minimal_example_data |
| plot_commonness | plot_commonness |
| plot_error | plot_error |
| run_optimization_min_conf | run_optimization_min_conf |
| spectre | spectre-package spectre |
| Pairwise matrix of species in common. | target_matrix |
