Package: biosampleR 1.0.4
biosampleR: Biodiversity Index Calculation and Bootstrap Confidence Interval Estimation
Provides tools for the calculation of common biodiversity indices from count data. Additionally, it incorporates bootstrapping techniques to generate multiple samples, facilitating the estimation of confidence intervals around these indices. Furthermore, the package allows for the exploration of how variation in these indices changes with differing numbers of sites, making it a useful tool with which to begin an ecological analysis. Methods are based on the following references: Chao et al. (2014) <doi:10.1890/13-0133.1>, Chao and Colwell (2022) <doi:10.1002/9781119902911.ch2>, Hsieh, Ma,` and Chao (2016) <doi:10.1111/2041-210X.12613>.
Authors:
biosampleR_1.0.4.tar.gz
biosampleR_1.0.4.zip(r-4.7-any)biosampleR_1.0.4.zip(r-4.6-any)biosampleR_1.0.4.zip(r-4.5-any)
biosampleR_1.0.4.tgz(r-4.6-any)biosampleR_1.0.4.tgz(r-4.5-any)
biosampleR_1.0.4.tar.gz(r-4.7-any)biosampleR_1.0.4.tar.gz(r-4.6-any)
biosampleR_1.0.4.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
biosampleR/json (API)
| # Install 'biosampleR' in R: |
| install.packages('biosampleR', repos = c('https://csim063.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/csim063/biosampler/issues
Datasets:
- BCI - Barro-Colorado Island Tree Counts
Last updated from:cbda3e16d2. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 128 | ||
| source / vignettes | OK | 165 | ||
| linux-release | OK | 114 | ||
| macos-release | OK | 177 | ||
| macos-oldrel | OK | 204 | ||
| windows-devel | OK | 63 | ||
| windows-release | OK | 74 | ||
| windows-oldrel | OK | 99 | ||
| wasm-release | OK | 105 |
Exports:calc_delta_varcalc_diversity_indicescreate_resamplegenerate_subsamplesget_sample_stats
Dependencies:clicpp11farverggplot2gluegtableisobandlabelinglifecycleR6RColorBrewerrlangS7scalesvctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Barro-Colorado Island Tree Counts | BCI |
| Calculate the change in variance with increasing number of sites | calc_delta_var |
| Calculate biodiversity summary indices from count data | calc_diversity_indices |
| Create multiple resamples of a data set. | create_resample |
| Generate subsamples of a data frame with a number of sites between a minimum and maximum value. | generate_subsamples |
| Calculate biodiversity measures and summary statistics for a data set using repeated sampling | get_sample_stats |